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CLEC16A C-type lectin domain containing 16A [ Charadrius vociferus (killdeer) ]

Gene ID: 104288870, updated on 3-Aug-2024

Summary

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Gene symbol
CLEC16A
Gene description
C-type lectin domain containing 16A
Locus tag
N301_01350
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See CLEC16A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009648977.1 (207922..284722, complement)

NW_009648977.1Genomic Context describing neighboring genes Neighboring gene suppressor of cytokine signaling 1 Neighboring gene Dexi homolog Neighboring gene class II major histocompatibility complex transactivator

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009648977.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein CLEC16A
Names
C-type lectin domain family 16 member A
Protein CLEC16A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009648977.1 Reference ASM70802v2

    Range
    207922..284722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009887744.1 → XP_009886046.1  LOW QUALITY PROTEIN: protein CLEC16A

    UniProtKB/TrEMBL
    A0A0A0ANC7
    Conserved Domains (1) summary
    pfam09758
    Location:23 → 170
    FPL; uncharacterized conserved protein
Nucleotide Protein
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