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VCAM1 vascular cell adhesion molecule 1 [ Charadrius vociferus (killdeer) ]

Gene ID: 104286199, updated on 3-Aug-2024

Summary

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Gene symbol
VCAM1
Gene description
vascular cell adhesion molecule 1
Locus tag
N301_03505
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See VCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009648332.1 (17651838..17659483, complement)

NW_009648332.1Genomic Context describing neighboring genes Neighboring gene dihydrolipoamide branched chain transacylase E2 Neighboring gene RNA 3'-terminal phosphate cyclase Neighboring gene G protein-coupled receptor 88 Neighboring gene cell division cycle 14A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009648332.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular cell adhesion protein 1
Names
Vascular cell adhesion protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009648332.1 Reference ASM70802v2

    Range
    17651838..17659483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009884772.1 → XP_009883074.1  vascular cell adhesion protein 1

    Conserved Domains (5) summary
    smart00408
    Location:418 → 478
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:323 → 399
    IG_like; Immunoglobulin like
    pfam07679
    Location:407 → 488
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:318 → 386
    Ig_3; Immunoglobulin domain
    cl11960
    Location:117 → 213
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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