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LOC104286038 mannose-binding protein C-like [ Charadrius vociferus (killdeer) ]

Gene ID: 104286038, updated on 3-Aug-2024

Summary

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Gene symbol
LOC104286038
Gene description
mannose-binding protein C-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
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Genomic context

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See LOC104286038 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009648330.1 (2031920..2066577)

NW_009648330.1Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 2 Neighboring gene RasGEF domain family member 1A Neighboring gene pulmonary surfactant-associated protein A-like Neighboring gene pulmonary surfactant-associated protein A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009648330.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: mannose-binding protein C-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009648330.1 Reference ASM70802v2

    Range
    2031920..2066577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009884576.1 → XP_009882878.1  LOW QUALITY PROTEIN: mannose-binding protein C-like

    Conserved Domains (3) summary
    pfam01391
    Location:122 → 162
    Collagen; Collagen triple helix repeat (20 copies)
    pfam09006
    Location:177 → 221
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerization
    cl02432
    Location:214 → 326
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
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