U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CNTN4 contactin 4 [ Charadrius vociferus (killdeer) ]

Gene ID: 104284513, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
CNTN4
Gene description
contactin 4
Locus tag
N301_10541
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CNTN4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009647846.1 (1030696..1166850)

NW_009647846.1Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule L1 like Neighboring gene contactin 6 Neighboring gene interleukin 5 receptor subunit alpha Neighboring gene tRNA nucleotidyl transferase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_009647846.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
contactin-4
Names
Contactin-4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009647846.1 Reference ASM70802v2

    Range
    1030696..1166850
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009882853.1 → XP_009881155.1  contactin-4 isoform X2

    UniProtKB/TrEMBL
    A0A0A0AES5
    Conserved Domains (5) summary
    cd04969
    Location:350 → 422
    Ig5_Contactin_like; Fifth Ig domain of contactin
    smart00410
    Location:345 → 422
    IG_like; Immunoglobulin like
    cd00063
    Location:524 → 617
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:255 → 329
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:441 → 524
    Ig; Immunoglobulin domain

  2. XM_009882852.1 → XP_009881154.1  contactin-4 isoform X1

    UniProtKB/TrEMBL
    A0A0A0AES5
    Conserved Domains (5) summary
    cd04969
    Location:322 → 394
    Ig5_Contactin_like; Fifth Ig domain of contactin
    smart00410
    Location:317 → 394
    IG_like; Immunoglobulin like
    cd00063
    Location:496 → 589
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:227 → 301
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:413 → 496
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.