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TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Charadrius vociferus (killdeer) ]

Gene ID: 104284295, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
Locus tag
N301_14744
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See TMTC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009647830.1 (5094534..5117820, complement)

NW_009647830.1Genomic Context describing neighboring genes Neighboring gene RNA-directed DNA polymerase from mobile element jockey-like Neighboring gene KIT ligand Neighboring gene centrosomal protein 290 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009647830.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 3
Names
Transmembrane and TPR repeat-containing protein 3
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009647830.1 Reference ASM70802v2

    Range
    5094534..5117820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009882616.1 → XP_009880918.1  transmembrane and TPR repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A0A0AEA9
    Conserved Domains (7) summary
    smart00028
    Location:446 → 479
    TPR; Tetratricopeptide repeats
    COG0457
    Location:410 → 683
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:597 → 630
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:667 → 733
    TPR_11; TPR repeat
    cl02164
    Location:806 → 910
    Utp11; Utp11 protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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