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RFNG RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Charadrius vociferus (killdeer) ]

Gene ID: 104283128, updated on 3-Aug-2024

Summary

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Gene symbol
RFNG
Gene description
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Locus tag
N301_09309
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See RFNG in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009647681.1 (227078..232223)

NW_009647681.1Genomic Context describing neighboring genes Neighboring gene dihydrouridine synthase 1 like Neighboring gene G protein pathway suppressor 1 Neighboring gene dicarbonyl and L-xylulose reductase Neighboring gene Rac family small GTPase 3 Neighboring gene leucine rich repeat containing 45

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009647681.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-N-acetylglucosaminyltransferase radical fringe
Names
Beta-1,3-N-acetylglucosaminyltransferase radical fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009647681.1 Reference ASM70802v2

    Range
    227078..232223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009881281.1 → XP_009879583.1  beta-1,3-N-acetylglucosaminyltransferase radical fringe

    UniProtKB/TrEMBL
    A0A0A0A878
    Conserved Domains (1) summary
    pfam02434
    Location:2 → 219
    Fringe; Fringe-like
Nucleotide Protein
Heading Accession and Version

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