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ACER3 alkaline ceramidase 3 [ Charadrius vociferus (killdeer) ]

Gene ID: 104283108, updated on 18-Sep-2024

Summary

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Gene symbol
ACER3
Gene description
alkaline ceramidase 3
Locus tag
N301_00207
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See ACER3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009647680.1 (10609015..10688673, complement)

NW_009647680.1Genomic Context describing neighboring genes Neighboring gene myosin VIIA Neighboring gene calpain 5 Neighboring gene olfactory marker protein Neighboring gene tsukushi, small leucine rich proteoglycan Neighboring gene guanylate cyclase 2F, retinal

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009647680.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phytosphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009647680.1 Reference ASM70802v2

    Range
    10609015..10688673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009881257.1 → XP_009879559.1  alkaline ceramidase 3

    UniProtKB/TrEMBL
    A0A0A0ABA8
    Conserved Domains (1) summary
    pfam05875
    Location:49 → 275
    Ceramidase; Ceramidase
Nucleotide Protein
Heading Accession and Version

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