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COLEC11 collectin subfamily member 11 [ Charadrius vociferus (killdeer) ]

Gene ID: 104282069, updated on 3-Aug-2024

Summary

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Gene symbol
COLEC11
Gene description
collectin subfamily member 11
Locus tag
N301_12623
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See COLEC11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009647400.1 (165812..185680, complement)

NW_009647400.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S7 Neighboring gene ribonuclease H1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009647400.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-11
Names
Collectin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009647400.1 Reference ASM70802v2

    Range
    165812..185680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009880134.1 → XP_009878436.1  collectin-11 isoform X1

    See identical proteins and their annotated locations for XP_009878436.1

    UniProtKB/TrEMBL
    A0A0A0A5D1
    Conserved Domains (2) summary
    cd03591
    Location:151 → 266
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:41 → 97
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_009880137.1 → XP_009878439.1  collectin-11 isoform X4

    See identical proteins and their annotated locations for XP_009878439.1

    UniProtKB/TrEMBL
    A0A0A0A5D1
    Conserved Domains (1) summary
    cd03591
    Location:103 → 218
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)

  3. XM_009880135.1 → XP_009878437.1  collectin-11 isoform X2

    See identical proteins and their annotated locations for XP_009878437.1

    UniProtKB/TrEMBL
    A0A0A0A5D1
    Conserved Domains (1) summary
    cd03591
    Location:127 → 242
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)

  4. XM_009880136.1 → XP_009878438.1  collectin-11 isoform X3

    See identical proteins and their annotated locations for XP_009878438.1

    UniProtKB/TrEMBL
    A0A0A0A5D1
    Conserved Domains (2) summary
    cd03591
    Location:127 → 242
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:40 → 74
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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