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CNTN3 contactin 3 [ Apaloderma vittatum (bar-tailed trogon) ]

Gene ID: 104270439, updated on 3-Aug-2024

Summary

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Gene symbol
CNTN3
Gene description
contactin 3
Locus tag
N311_01116
Gene type
protein coding
RefSeq status
MODEL
Organism
Apaloderma vittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Trogoniformes; Trogonidae; Apaloderma
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See CNTN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM70340v1 (GCF_000703405.1) Unplaced Scaffold NW_009703940.1 (52353..103084, complement)

NW_009703940.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009703940.1 Unplaced Scaffold Reference ASM70340v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-3
Names
Contactin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apaloderma vittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70340v1

Genomic

  1. NW_009703940.1 Reference ASM70340v1

    Range
    52353..103084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009864817.1 → XP_009863119.1  contactin-3

    See identical proteins and their annotated locations for XP_009863119.1

    UniProtKB/TrEMBL
    A0A091N6D6
    Conserved Domains (6) summary
    smart00060
    Location:783 → 863
    FN3; Fibronectin type 3 domain
    smart00410
    Location:299 → 376
    IG_like; Immunoglobulin like
    cd00063
    Location:478 → 575
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:198 → 283
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:685 → 771
    fn3; Fibronectin type III domain
    cl11960
    Location:107 → 195
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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