U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SGMS2 sphingomyelin synthase 2 [ Gavia stellata (red-throated loon) ]

Gene ID: 104264577, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
Locus tag
N328_01762
See related
EnsemblRapid:ENSGSTG00005002409
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SGMS2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 5 NC_082598.1 (57787569..57814448)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009285613.1 (19439..27243)

Chromosome 5 - NC_082598.1Genomic Context describing neighboring genes Neighboring gene dickkopf WNT signaling pathway inhibitor 2 Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1 Neighboring gene cytochrome P450 2U1 Neighboring gene hydroxyacyl-CoA dehydrogenase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2
Names
Phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082598.1 Reference bGavSte3.hap2

    Range
    57787569..57814448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009821711.2 → XP_009820013.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for XP_009820013.1

    UniProtKB/TrEMBL
    A0A093F3S6
    Related
    ENSGSTP00005003561.1, ENSGSTT00005003714.1
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.