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FDPS farnesyl diphosphate synthase [ Gavia stellata (red-throated loon) ]

Gene ID: 104264022, updated on 3-Aug-2024

Summary

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Gene symbol
FDPS
Gene description
farnesyl diphosphate synthase
Locus tag
N328_03509
See related
EnsemblRapid:ENSGSTG00005011120
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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See FDPS in Genome Data Viewer
Location:
chromosome: 33
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 33 NC_082626.1 (3112468..3115009)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009283119.1 (52..1940, complement)

Chromosome 33 - NC_082626.1Genomic Context describing neighboring genes Neighboring gene CDC like kinase 2 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene RUN and SH3 domain containing 1 Neighboring gene ASH1 like histone lysine methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase
Names
Farnesyl pyrophosphate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082626.1 Reference bGavSte3.hap2

    Range
    3112468..3115009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059832115.1 → XP_059688098.1  farnesyl pyrophosphate synthase

    Related
    ENSGSTP00005016969.1, ENSGSTT00005017587.1
Nucleotide Protein
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Gene LinkOut

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