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XYLB xylulokinase [ Gavia stellata (red-throated loon) ]

Gene ID: 104263968, updated on 3-Aug-2024

Summary

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Gene symbol
XYLB
Gene description
xylulokinase
Locus tag
N328_02171
See related
EnsemblRapid:ENSGSTG00005015497
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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See XYLB in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 6 NC_082599.1 (7359179..7446482, complement)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009282947.1 (22384..53429, complement)

Chromosome 6 - NC_082599.1Genomic Context describing neighboring genes Neighboring gene exo/endonuclease G Neighboring gene activin A receptor type 2B Neighboring gene chromosome 6 C9orf152 homolog Neighboring gene negative regulator of ubiquitin like proteins 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-xylulokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylulose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylulose kinase
Names
Xylulose kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082599.1 Reference bGavSte3.hap2

    Range
    7359179..7446482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059818842.1 → XP_059674825.1  xylulose kinase isoform X2

    Related
    ENSGSTP00005024346.1, ENSGSTT00005025398.1

  2. XM_059818841.1 → XP_059674824.1  xylulose kinase isoform X1

    Related
    ENSGSTP00005024369.1, ENSGSTT00005025423.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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