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SUMF1 sulfatase modifying factor 1 [ Gavia stellata (red-throated loon) ]

Gene ID: 104261984, updated on 3-Aug-2024

Summary

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Gene symbol
SUMF1
Gene description
sulfatase modifying factor 1
Locus tag
N328_04547
See related
EnsemblRapid:ENSGSTG00005016442
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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See SUMF1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 12 NC_082605.1 (23475809..23509966, complement)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009322929.1 (4522..36938)

Chromosome 12 - NC_082605.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat neuronal 1 Neighboring gene histone-lysine N-methyltransferase SETMAR Neighboring gene uncharacterized LOC132317957 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
formylglycine-generating enzyme
Names
Sulfatase-modifying factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082605.1 Reference bGavSte3.hap2

    Range
    23475809..23509966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009818200.2 → XP_009816502.1  formylglycine-generating enzyme

    UniProtKB/TrEMBL
    A0A093FMB1
    Related
    ENSGSTP00005025177.1, ENSGSTT00005026304.1
    Conserved Domains (2) summary
    COG1262
    Location:1 → 278
    YfmG; Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones]
    pfam03781
    Location:1 → 277
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1
Nucleotide Protein
Heading Accession and Version

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