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SYNJ1 synaptojanin 1 [ Gavia stellata (red-throated loon) ]

Gene ID: 104261576, updated on 3-Aug-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
Locus tag
N328_10151
See related
EnsemblRapid:ENSGSTG00005013766
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 1 NC_082594.1 (102889605..102956450)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009321497.1 (2416..32731, complement)

Chromosome 1 - NC_082594.1Genomic Context describing neighboring genes Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene cilia and flagella associated protein 298 Neighboring gene eva-1 homolog C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1
Names
Synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082594.1 Reference bGavSte3.hap2

    Range
    102889605..102956450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059826413.1 → XP_059682396.1  synaptojanin-1 isoform X2

    Related
    ENSGSTP00005023220.1, ENSGSTT00005024179.1

  2. XM_059826405.1 → XP_059682388.1  synaptojanin-1 isoform X1

  3. XM_059826420.1 → XP_059682403.1  synaptojanin-1 isoform X3

  4. XM_059826428.1 → XP_059682411.1  synaptojanin-1 isoform X4

    Related
    ENSGSTP00005023133.1, ENSGSTT00005024091.1
Nucleotide Protein
Heading Accession and Version

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