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PPP1R3D protein phosphatase 1 regulatory subunit 3D [ Gavia stellata (red-throated loon) ]

Gene ID: 104256687, updated on 3-Aug-2024

Summary

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Gene symbol
PPP1R3D
Gene description
protein phosphatase 1 regulatory subunit 3D
Locus tag
N328_03464
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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See PPP1R3D in Genome Data Viewer
Location:
chromosome: 20
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 20 NC_082613.1 (5316693..5317715)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009301461.1 (6716..7888, complement)

Chromosome 20 - NC_082613.1Genomic Context describing neighboring genes Neighboring gene cadherin 26 Neighboring gene family with sequence similarity 217 member B Neighboring gene synaptonemal complex protein 2 Neighboring gene phosphatase and actin regulator 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase 1 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of protein phosphatase type 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase 1 regulatory subunit 3D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082613.1 Reference bGavSte3.hap2

    Range
    5316693..5317715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009811214.2 → XP_009809516.1  protein phosphatase 1 regulatory subunit 3D

    Conserved Domains (1) summary
    pfam03370
    Location:177 → 286
    CBM_21; Carbohydrate/starch-binding module (family 21)
Nucleotide Protein
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