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SULF1 sulfatase 1 [ Gavia stellata (red-throated loon) ]

Gene ID: 104254730, updated on 3-Aug-2024

Summary

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Gene symbol
SULF1
Gene description
sulfatase 1
See related
EnsemblRapid:ENSGSTG00005001728
Gene type
protein coding
RefSeq status
MODEL
Organism
Gavia stellata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Gaviiformes; Gaviidae; Gavia
Orthologs
human mouse all
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Genomic context

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See SULF1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_09 current bGavSte3.hap2 (GCF_030936135.1) 3 NC_082596.1 (37405191..37470293, complement)
100 previous assembly ASM69087v1 (GCF_000690875.1) Unplaced Scaffold NW_009293626.1 (13156..76936)

Chromosome 3 - NC_082596.1Genomic Context describing neighboring genes Neighboring gene PR/SET domain 14 Neighboring gene solute carrier organic anion transporter family member 5A1 Neighboring gene chromosome 3 C8orf34 homolog Neighboring gene U12 minor spliceosomal RNA Neighboring gene phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine-6-sulfatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycosaminoglycan binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular sulfatase Sulf-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030936135.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGavSte3.hap2

Genomic

  1. NC_082596.1 Reference bGavSte3.hap2

    Range
    37405191..37470293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059815883.1 → XP_059671866.1  extracellular sulfatase Sulf-1 isoform X7

  2. XM_059815881.1 → XP_059671864.1  extracellular sulfatase Sulf-1 isoform X6

  3. XM_059815879.1 → XP_059671862.1  extracellular sulfatase Sulf-1 isoform X4

  4. XM_059815878.1 → XP_059671861.1  extracellular sulfatase Sulf-1 isoform X3

  5. XM_059815877.1 → XP_059671860.1  extracellular sulfatase Sulf-1 isoform X2

    Related
    ENSGSTP00005002700.1, ENSGSTT00005002758.1

  6. XM_059815880.1 → XP_059671863.1  extracellular sulfatase Sulf-1 isoform X5

  7. XM_059815876.1 → XP_059671859.1  extracellular sulfatase Sulf-1 isoform X1

    Related
    ENSGSTP00005002695.1, ENSGSTT00005002753.1
Nucleotide Protein
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