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LOC104249528 xylosyltransferase sqv-6-like [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104249528, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104249528
Gene description
xylosyltransferase sqv-6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104249528 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009522681.1 (45087..49746, complement)

NW_009522681.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2-like Neighboring gene ABC transporter B family member 20 Neighboring gene histidine biosynthesis bifunctional protein hisIE, chloroplastic Neighboring gene uncharacterized LOC104249530

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009522681.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase sqv-6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009522681.1 Reference Nsyl Primary Assembly

    Range
    45087..49746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009805965.1 → XP_009804267.1  xylosyltransferase sqv-6-like

    UniProtKB/TrEMBL
    A0A1U7YJK0
    Conserved Domains (1) summary
    pfam02485
    Location:49 → 291
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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