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LOC104236866 sucrose synthase-like [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104236866, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104236866
Gene description
sucrose synthase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104236866 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009448502.1 (5608..10226, complement)

NW_009448502.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104236867

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009448502.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009448502.1 Reference Nsyl Primary Assembly

    Range
    5608..10226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009790891.1 → XP_009789193.1  sucrose synthase-like

    UniProtKB/TrEMBL
    A0A1U7XE95
    Conserved Domains (3) summary
    PLN00142
    Location:7 → 803
    PLN00142; sucrose synthase
    pfam00534
    Location:560 → 731
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:12 → 548
    Sucrose_synth; Sucrose synthase
Nucleotide Protein
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