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LOC104231647 callose synthase 12-like [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104231647, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104231647
Gene description
callose synthase 12-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104231647 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009395914.1 (169436..180020)

NW_009395914.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104231649 Neighboring gene uncharacterized LOC104231650 Neighboring gene probable galacturonosyltransferase-like 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009395914.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009395914.1 Reference Nsyl Primary Assembly

    Range
    169436..180020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009784675.1 → XP_009782977.1  callose synthase 12-like

    UniProtKB/TrEMBL
    A0A1U7WSR8
    Conserved Domains (2) summary
    pfam02364
    Location:867 → 1634
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:154 → 266
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

RNA

  1. XR_712123.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases