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LOC104225580 probable beta-1,3-galactosyltransferase 2 [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104225580, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104225580
Gene description
probable beta-1,3-galactosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104225580 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009573786.1 (191367..197398, complement)

NW_009573786.1Genomic Context describing neighboring genes Neighboring gene 2-alkenal reductase (NADP(+)-dependent)-like Neighboring gene uncharacterized LOC104225581

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009573786.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009573786.1 Reference Nsyl Primary Assembly

    Range
    191367..197398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009777416.1 → XP_009775718.1  probable beta-1,3-galactosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A1U7WAP8
    Conserved Domains (3) summary
    PLN03193
    Location:1 → 404
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:18 → 113
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:152 → 347
    Galactosyl_T; Galactosyltransferase

  2. XM_009777415.1 → XP_009775717.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A1U7W6R4
    Conserved Domains (3) summary
    PLN03193
    Location:1 → 405
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:18 → 114
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:153 → 348
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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