U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC104223125 probable pectate lyase 12 [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104223125, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC104223125
Gene description
probable pectate lyase 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC104223125 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009562031.1 (13161..17936, complement)

NW_009562031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104223126

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_009562031.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable pectate lyase 12

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009562031.1 Reference Nsyl Primary Assembly

    Range
    13161..17936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009774491.1 → XP_009772793.1  probable pectate lyase 12

    UniProtKB/TrEMBL
    A0A1U7W2F2
    Conserved Domains (2) summary
    smart00656
    Location:149 → 342
    Amb_all; Amb_all domain
    pfam13229
    Location:217 → 293
    Beta_helix; Right handed beta helix region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases