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LOC104221937 cellulose synthase-like protein D3 [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104221937, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104221937
Gene description
cellulose synthase-like protein D3
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104221937 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009556819.1 (45231..51250)

NW_009556819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104221939 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 Neighboring gene transcription factor HBP-1a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009556819.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009556819.1 Reference Nsyl Primary Assembly

    Range
    45231..51250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009773098.1 → XP_009771400.1  cellulose synthase-like protein D3

    See identical proteins and their annotated locations for XP_009771400.1

    UniProtKB/TrEMBL
    A0A1U7W9S2
    Conserved Domains (3) summary
    PLN02248
    Location:3 → 1137
    PLN02248; cellulose synthase-like protein
    pfam14570
    Location:119 → 165
    zf-RING_4; RING/Ubox like zinc-binding domain
    cl11394
    Location:591 → 890
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_009773097.1 → XP_009771399.1  cellulose synthase-like protein D3

    See identical proteins and their annotated locations for XP_009771399.1

    UniProtKB/TrEMBL
    A0A1U7W9S2
    Conserved Domains (3) summary
    PLN02248
    Location:3 → 1137
    PLN02248; cellulose synthase-like protein
    pfam14570
    Location:119 → 165
    zf-RING_4; RING/Ubox like zinc-binding domain
    cl11394
    Location:591 → 890
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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