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LOC104221421 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104221421, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104221421
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104221421 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009554720.1 (24324..27449, complement)

NW_009554720.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIFC3 Neighboring gene mitogen-activated protein kinase kinase kinase NPK1-like Neighboring gene putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009554720.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009554720.1 Reference Nsyl Primary Assembly

    Range
    24324..27449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009772493.1 → XP_009770795.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

    UniProtKB/TrEMBL
    A0A1U7W969
    Conserved Domains (1) summary
    cd02537
    Location:263 → 497
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

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