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LOC104217107 mannan synthase 1-like [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104217107, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104217107
Gene description
mannan synthase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104217107 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009540587.1 (10056..14888)

NW_009540587.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104217108

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009540587.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannan synthase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009540587.1 Reference Nsyl Primary Assembly

    Range
    10056..14888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009767259.1 → XP_009765561.1  mannan synthase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A1U7VKS4
    Conserved Domains (2) summary
    cd06437
    Location:92 → 328
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
    COG1215
    Location:39 → 477
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]

  2. XM_009767260.1 → XP_009765562.1  mannan synthase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A1U7VC08
    Conserved Domains (2) summary
    cd06437
    Location:92 → 328
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
    pfam13641
    Location:92 → 327
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
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