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LOC104216491 probable galacturonosyltransferase-like 1 [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104216491, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104216491
Gene description
probable galacturonosyltransferase-like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104216491 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009539055.1 (18877..24047, complement)

NW_009539055.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene lysosomal amino acid transporter 1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009539055.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009539055.1 Reference Nsyl Primary Assembly

    Range
    18877..24047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009766542.1 → XP_009764844.1  probable galacturonosyltransferase-like 1

    UniProtKB/TrEMBL
    A0A1U7VR53
    Conserved Domains (1) summary
    pfam01501
    Location:58 → 317
    Glyco_transf_8; Glycosyl transferase family 8

RNA

  1. XR_708508.1 RNA Sequence

Nucleotide Protein
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