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LOC104215582 probable beta-1,4-xylosyltransferase IRX10L [ Nicotiana sylvestris (wood tobacco) ]

Gene ID: 104215582, updated on 22-Oct-2023

Summary

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Gene symbol
LOC104215582
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana sylvestris
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC104215582 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Nsyl (GCF_000393655.1) Unplaced Scaffold NW_009361648.1 (4102..6137)

NW_009361648.1Genomic Context describing neighboring genes Neighboring gene putative late blight resistance protein homolog R1B-23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009361648.1 Unplaced Scaffold Reference Nsyl Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana sylvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nsyl Primary Assembly

Genomic

  1. NW_009361648.1 Reference Nsyl Primary Assembly

    Range
    4102..6137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009765426.1 → XP_009763728.1  probable beta-1,4-xylosyltransferase IRX10L

    UniProtKB/TrEMBL
    A0A1U7VBJ2
    Conserved Domains (1) summary
    pfam03016
    Location:50 → 346
    Exostosin; Exostosin family
Nucleotide Protein
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