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VCAM1 vascular cell adhesion molecule 1 [ Cariama cristata (Red-legged seriema) ]

Gene ID: 104165562, updated on 3-Aug-2024

Summary

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Gene symbol
VCAM1
Gene description
vascular cell adhesion molecule 1
Locus tag
N322_02406
Gene type
protein coding
RefSeq status
MODEL
Organism
Cariama cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Cariamiformes; Cariamidae; Cariama
Orthologs
human mouse all
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Genomic context

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See VCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM69053v1 (GCF_000690535.1) Unplaced Scaffold NW_009629566.1 (18009..24676, complement)

NW_009629566.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009629566.1 Unplaced Scaffold Reference ASM69053v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular cell adhesion protein 1
Names
Vascular cell adhesion protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cariama cristata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69053v1

Genomic

  1. NW_009629566.1 Reference ASM69053v1

    Range
    18009..24676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009705219.1 → XP_009703521.1  vascular cell adhesion protein 1

    UniProtKB/TrEMBL
    A0A091M9V6
    Conserved Domains (3) summary
    smart00408
    Location:239 → 296
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:417 → 489
    IG_like; Immunoglobulin like
    cl11960
    Location:118 → 213
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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