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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Cariama cristata (Red-legged seriema) ]

Gene ID: 104162263, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cariama cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Cariamiformes; Cariamidae; Cariama
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM69053v1 (GCF_000690535.1) Unplaced Scaffold NW_009618663.1 (37131..82183, complement)

NW_009618663.1Genomic Context describing neighboring genes Neighboring gene ovochymase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009618663.1 Unplaced Scaffold Reference ASM69053v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cariama cristata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69053v1

Genomic

  1. NW_009618663.1 Reference ASM69053v1

    Range
    37131..82183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009700948.1 → XP_009699250.1  transmembrane and TPR repeat-containing protein 1

    Conserved Domains (6) summary
    sd00006
    Location:166 → 194
    TPR; TPR repeat [structural motif]
    pfam07719
    Location:336 → 368
    TPR_2; Tetratricopeptide repeat
    pfam13374
    Location:236 → 267
    TPR_10; Tetratricopeptide repeat
    pfam13414
    Location:166 → 231
    TPR_11; TPR repeat
    pfam13428
    Location:273 → 310
    TPR_14; Tetratricopeptide repeat
    pfam14559
    Location:281 → 344
    TPR_19; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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