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LOC104145540 toll-like receptor 2 type-2 [ Struthio camelus (African ostrich) ]

Gene ID: 104145540, updated on 30-Oct-2024

Summary

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Gene symbol
LOC104145540
Gene description
toll-like receptor 2 type-2
Locus tag
N308_08138
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
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Genomic context

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See LOC104145540 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_10 current bStrCam1.hap1 (GCF_040807025.1) 4 NC_090945.1 (38907591..38916086)

Chromosome 4 - NC_090945.1Genomic Context describing neighboring genes Neighboring gene transmembrane 131 like Neighboring gene uncharacterized LOC104145543 Neighboring gene toll-like receptor 2 type-1 Neighboring gene ring finger protein 175 Neighboring gene secreted frizzled related protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090945.1 Chromosome 4 Reference bStrCam1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2 type-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040807025.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrCam1.hap1

Genomic

  1. NC_090945.1 Reference bStrCam1.hap1

    Range
    38907591..38916086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068942351.1 → XP_068798452.1  toll-like receptor 2 type-2 isoform X1

  2. XM_068942353.1 → XP_068798454.1  toll-like receptor 2 type-2 isoform X2

  3. XM_009677114.2 → XP_009675409.1  toll-like receptor 2 type-2 isoform X3

    See identical proteins and their annotated locations for XP_009675409.1

    UniProtKB/TrEMBL
    A0A093HIJ3
    Conserved Domains (4) summary
    smart00255
    Location:639 → 783
    TIR; Toll - interleukin 1 - resistance
    cd00116
    Location:356 → 491
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:59 → 79
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:79 → 136
    LRR_8; Leucine rich repeat

  4. XM_009677115.2 → XP_009675410.1  toll-like receptor 2 type-2 isoform X3

    See identical proteins and their annotated locations for XP_009675410.1

    UniProtKB/TrEMBL
    A0A093HIJ3
    Conserved Domains (4) summary
    smart00255
    Location:639 → 783
    TIR; Toll - interleukin 1 - resistance
    cd00116
    Location:356 → 491
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:59 → 79
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:79 → 136
    LRR_8; Leucine rich repeat

  5. XM_068942352.1 → XP_068798453.1  toll-like receptor 2 type-2 isoform X1

Nucleotide Protein
Heading Accession and Version

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