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SC5D sterol-C5-desaturase [ Struthio camelus (African ostrich) ]

Gene ID: 104143508, updated on 9-Oct-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
Locus tag
N308_07813
See related
Ensembl:ENSSCUG00000011465
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_10 current bStrCam1.hap1 (GCF_040807025.1) 22 NC_090963.1 (4232895..4240099)

Chromosome 22 - NC_090963.1Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor E like Neighboring gene tectorin alpha Neighboring gene uncharacterized LOC104143509 Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC138061884 Neighboring gene uncharacterized LOC138061885

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090963.1 Chromosome 22 Reference bStrCam1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables C-5 sterol desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase
Names
Lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040807025.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrCam1.hap1

Genomic

  1. NC_090963.1 Reference bStrCam1.hap1

    Range
    4232895..4240099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068916519.1 → XP_068772620.1  lathosterol oxidase

  2. XM_068916521.1 → XP_068772622.1  lathosterol oxidase

  3. XM_068916522.1 → XP_068772623.1  lathosterol oxidase

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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