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PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [ Egretta garzetta (little egret) ]

Gene ID: 104135525, updated on 3-Aug-2024

Summary

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Gene symbol
PAPSS1
Gene description
3'-phosphoadenosine 5'-phosphosulfate synthase 1
Locus tag
Z169_09970
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See PAPSS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258755.1 (144130..184884, complement)

NW_009258755.1Genomic Context describing neighboring genes Neighboring gene sphingomyelin synthase 2 Neighboring gene hydroxyacyl-CoA dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009258755 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables adenylylsulfate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sulfate adenylyltransferase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfate assimilation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1
Names
Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009258755.1 Reference ASM68718v1 Primary Assembly

    Range
    144130..184884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035888925.1 → XP_035744818.1  bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1

    UniProtKB/TrEMBL
    A0A091JIB2
    Conserved Domains (2) summary
    cd00517
    Location:233 → 596
    ATPS; ATP-sulfurylase
    pfam01583
    Location:30 → 184
    APS_kinase; Adenylylsulphate kinase
Nucleotide Protein
Heading Accession and Version

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