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ZBTB6 zinc finger and BTB domain containing 6 [ Egretta garzetta (little egret) ]

Gene ID: 104135206, updated on 3-Aug-2024

Summary

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Gene symbol
ZBTB6
Gene description
zinc finger and BTB domain containing 6
Locus tag
Z169_04380
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See ZBTB6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258673.1 (911409..913845)

NW_009258673.1Genomic Context describing neighboring genes Neighboring gene RAB GTPase activating protein 1 Neighboring gene G protein-coupled receptor 21 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene small nucleolar RNA SNORD90 Neighboring gene phosducin like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009258673 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 6
Names
Zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009258673.1 Reference ASM68718v1 Primary Assembly

    Range
    911409..913845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009648828.2 → XP_009647123.1  zinc finger and BTB domain-containing protein 6

    UniProtKB/TrEMBL
    A0A091JHC6
    Conserved Domains (6) summary
    smart00225
    Location:34 → 127
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:252 → 420
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:329 → 349
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:327 → 349
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:23 → 123
    BTB; BTB/POZ domain
    pfam13465
    Location:341 → 365
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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