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FUCA1 alpha-L-fucosidase 1 [ Egretta garzetta (little egret) ]

Gene ID: 104134966, updated on 3-Aug-2024

Summary

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Gene symbol
FUCA1
Gene description
alpha-L-fucosidase 1
Locus tag
Z169_00224
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See FUCA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258666.1 (1393195..1398035)

NW_009258666.1Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 10 Neighboring gene proline rich nuclear receptor coactivator 2 Neighboring gene cannabinoid receptor 2 Neighboring gene 3-hydroxy-3-methylglutaryl-CoA lyase Neighboring gene UDP-galactose-4-epimerase Neighboring gene lysophospholipase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009258666 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-fucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tissue alpha-L-fucosidase
Names
Tissue alpha-L-fucosidase
fucosidase, alpha-L- 1, tissue

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009258666.1 Reference ASM68718v1 Primary Assembly

    Range
    1393195..1398035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009648569.2 → XP_009646864.1  tissue alpha-L-fucosidase

    See identical proteins and their annotated locations for XP_009646864.1

    UniProtKB/TrEMBL
    A0A091IR84
    Conserved Domains (3) summary
    smart00812
    Location:1 → 308
    Alpha_L_fucos; Alpha-L-fucosidase
    COG3669
    Location:1 → 281
    AfuC; Alpha-L-fucosidase [Carbohydrate transport and metabolism]
    pfam16757
    Location:273 → 358
    Fucosidase_C; Alpha-L-fucosidase C-terminal domain
Nucleotide Protein
Heading Accession and Version

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