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SYNJ2 synaptojanin 2 [ Egretta garzetta (little egret) ]

Gene ID: 104131176, updated on 12-Mar-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
Locus tag
Z169_09579
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009260493.1 (3011714..3067781)

NW_009260493.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene sorting nexin 9 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009260493 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2
Names
Synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009260493.1 Reference ASM68718v1 Primary Assembly

    Range
    3011714..3067781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009644304.2 → XP_009642599.1  synaptojanin-2

    UniProtKB/TrEMBL
    A0A091JIU3
    Conserved Domains (4) summary
    cd09099
    Location:473 → 808
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    pfam02383
    Location:4 → 285
    Syja_N; SacI homology domain
    pfam17040
    Location:1136 → 1372
    CBP_CCPA; Cellulose-complementing protein A
    cl17169
    Location:807 → 952
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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