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FREM1 FRAS1 related extracellular matrix 1 [ Egretta garzetta (little egret) ]

Gene ID: 104127382, updated on 3-Aug-2024

Summary

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Gene symbol
FREM1
Gene description
FRAS1 related extracellular matrix 1
Locus tag
Z169_03388
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See FREM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259860.1 (2608341..2673128)

NW_009259860.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene sperm-associated antigen 4 protein-like Neighboring gene cerberus 1, DAN family BMP antagonist Neighboring gene zinc finger DHHC-type palmitoyltransferase 21

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259860 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FRAS1-related extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259860.1 Reference ASM68718v1 Primary Assembly

    Range
    2608341..2673128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035895575.1 → XP_035751468.1  FRAS1-related extracellular matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A091JBB0
    Conserved Domains (3) summary
    smart00034
    Location:2060 → 2182
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:1491 → 1599
    Cadherin_3; Cadherin-like
    cl02522
    Location:1743 → 1831
    Calx-beta; Calx-beta domain

  2. XM_035895576.1 → XP_035751469.1  FRAS1-related extracellular matrix protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A091JBB0
    Conserved Domains (3) summary
    smart00034
    Location:2018 → 2140
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:1491 → 1599
    Cadherin_3; Cadherin-like
    cl02522
    Location:1743 → 1831
    Calx-beta; Calx-beta domain
Nucleotide Protein
Heading Accession and Version

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