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PIGZ phosphatidylinositol glycan anchor biosynthesis class Z [ Egretta garzetta (little egret) ]

Gene ID: 104127083, updated on 3-Aug-2024

Summary

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Gene symbol
PIGZ
Gene description
phosphatidylinositol glycan anchor biosynthesis class Z
Locus tag
Z169_10339
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See PIGZ in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259796.1 (3927443..3929014, complement)

NW_009259796.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118452371 Neighboring gene carboxypeptidase B1 Neighboring gene uncharacterized LOC104127082 Neighboring gene melanotransferrin Neighboring gene discs large MAGUK scaffold protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259796 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259796.1 Reference ASM68718v1 Primary Assembly

    Range
    3927443..3929014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009639713.2 → XP_009638008.2  GPI mannosyltransferase 4

    UniProtKB/TrEMBL
    A0A091JYV5
    Conserved Domains (1) summary
    cl21590
    Location:5 → 384
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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