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LOC104126313 carbohydrate sulfotransferase 4 [ Egretta garzetta (little egret) ]

Gene ID: 104126313, updated on 3-Aug-2024

Summary

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Gene symbol
LOC104126313
Gene description
carbohydrate sulfotransferase 4
Locus tag
Z169_13349
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Also known as
CHST4
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Genomic context

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See LOC104126313 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258304.1 (87109..88290, complement)

NW_009258304.1Genomic Context describing neighboring genes Neighboring gene lysyl-tRNA synthetase 1 Neighboring gene TERF2 interacting protein Neighboring gene tyrosine aminotransferase Neighboring gene PH domain and leucine rich repeat protein phosphatase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009258304 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: carbohydrate sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009258304.1 Reference ASM68718v1 Primary Assembly

    Range
    87109..88290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009638872.2 → XP_009637167.2  LOW QUALITY PROTEIN: carbohydrate sulfotransferase 4

    UniProtKB/TrEMBL
    A0A091IMB2
    Conserved Domains (1) summary
    pfam13469
    Location:42 → 295
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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