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HEXD hexosaminidase D [ Egretta garzetta (little egret) ]

Gene ID: 104125295, updated on 3-Aug-2024

Summary

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Gene symbol
HEXD
Gene description
hexosaminidase D
Locus tag
Z169_08227
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Also known as
HEXDC
Orthologs
human mouse all
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Genomic context

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See HEXD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259586.1 (2077340..2087043, complement)

NW_009259586.1Genomic Context describing neighboring genes Neighboring gene nuclear prelamin A recognition factor Neighboring gene cytochrome b-245 chaperone 1 Neighboring gene 2-oxoglutarate and iron dependent oxygenase domain containing 3 Neighboring gene urotensin-2 receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259586 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hexosaminidase D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259586.1 Reference ASM68718v1 Primary Assembly

    Range
    2077340..2087043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035893304.1 → XP_035749197.1  hexosaminidase D isoform X1

    UniProtKB/TrEMBL
    A0A091J364
    Conserved Domains (1) summary
    cl02948
    Location:13 → 249
    GH20_hexosaminidase; Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. ...

  2. XM_035893305.1 → XP_035749198.1  hexosaminidase D isoform X2

    UniProtKB/TrEMBL
    A0A091J364
    Conserved Domains (1) summary
    cl02948
    Location:1 → 231
    GH20_hexosaminidase; Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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