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SDC4 syndecan 4 [ Egretta garzetta (little egret) ]

Gene ID: 104124950, updated on 3-Aug-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
Locus tag
Z169_04478
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Also known as
Syndecan-4
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259491.1 (970267..973552, complement)

NW_009259491.1Genomic Context describing neighboring genes Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene SYS1 golgi trafficking protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259491 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259491.1 Reference ASM68718v1 Primary Assembly

    Range
    970267..973552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035892884.1 → XP_035748777.1  syndecan-4 isoform X2

    UniProtKB/TrEMBL
    A0A091J178
    Conserved Domains (1) summary
    pfam01034
    Location:108 → 165
    Syndecan; Syndecan domain

  2. XM_009637339.2 → XP_009635634.1  syndecan-4 isoform X1

    UniProtKB/TrEMBL
    A0A091J178
    Conserved Domains (1) summary
    pfam01034
    Location:111 → 168
    Syndecan; Syndecan domain
Nucleotide Protein
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