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COLEC10 collectin subfamily member 10 [ Egretta garzetta (little egret) ]

Gene ID: 104123709, updated on 3-Aug-2024

Summary

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Gene symbol
COLEC10
Gene description
collectin subfamily member 10
Locus tag
Z169_01483
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See COLEC10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259239.1 (2103482..2123466, complement)

NW_009259239.1Genomic Context describing neighboring genes Neighboring gene cellular communication network factor 3 Neighboring gene mal, T cell differentiation protein 2 Neighboring gene TNF receptor superfamily member 11b Neighboring gene sterile alpha motif domain containing 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259239 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collectin-10
Names
Collectin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259239.1 Reference ASM68718v1 Primary Assembly

    Range
    2103482..2123466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009635987.2 → XP_009634282.1  collectin-10

    See identical proteins and their annotated locations for XP_009634282.1

    UniProtKB/TrEMBL
    A0A091IZ07
    Conserved Domains (2) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:45 → 86
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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