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CHST8 carbohydrate sulfotransferase 8 [ Egretta garzetta (little egret) ]

Gene ID: 104123647, updated on 3-Aug-2024

Summary

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Gene symbol
CHST8
Gene description
carbohydrate sulfotransferase 8
Locus tag
Z169_05003
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See CHST8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259237.1 (3227314..3374161, complement)

NW_009259237.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 4-like Neighboring gene potassium channel tetramerization domain containing 15 Neighboring gene peptidase D Neighboring gene CCAAT enhancer binding protein gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259237 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259237.1 Reference ASM68718v1 Primary Assembly

    Range
    3227314..3374161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009635920.1 → XP_009634215.1  carbohydrate sulfotransferase 8

    Conserved Domains (1) summary
    pfam03567
    Location:192 → 421
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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Gene LinkOut

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