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LGALS3 galectin 3 [ Egretta garzetta (little egret) ]

Gene ID: 104122984, updated on 3-Aug-2024

Summary

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Gene symbol
LGALS3
Gene description
galectin 3
Locus tag
Z169_07159
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Also known as
Galectin-3
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See LGALS3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259099.1 (404053..406020, complement)

NW_009259099.1Genomic Context describing neighboring genes Neighboring gene F-box protein 34 Neighboring gene DLG associated protein 5 Neighboring gene uncharacterized LOC118451912 Neighboring gene mitogen-activated protein kinase 1 interacting protein 1 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259099 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables IgE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in eosinophil chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of extrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of calcium ion import IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in immunological synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259099.1 Reference ASM68718v1 Primary Assembly

    Range
    404053..406020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035890722.1 → XP_035746615.1  galectin-3

    UniProtKB/TrEMBL
    A0A091IZD7
    Conserved Domains (1) summary
    smart00908
    Location:105 → 227
    Gal-bind_lectin; Galactoside-binding lectin
Nucleotide Protein
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