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SGCA sarcoglycan alpha [ Cuculus canorus (common cuckoo) ]

Gene ID: 104068288, updated on 3-Aug-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
Locus tag
N303_09025
See related
EnsemblRapid:ENSCCOG00010011549
Gene type
protein coding
RefSeq status
MODEL
Organism
Cuculus canorus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Cuculiformes; Cuculidae; Cuculus
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 25
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current bCucCan1.pri (GCF_017976375.1) 25 NC_071425.1 (332078..338217, complement)
100 previous assembly ASM70932v1 (GCF_000709325.1) Unplaced Scaffold NW_009243866.1 (974666..978121)

Chromosome 25 - NC_071425.1Genomic Context describing neighboring genes Neighboring gene all-trans-retinol 13,14-reductase Neighboring gene basic proline-rich protein-like Neighboring gene collagen type I alpha 1 chain Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan
Names
Alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_017976375.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCucCan1.pri

Genomic

  1. NC_071425.1 Reference bCucCan1.pri

    Range
    332078..338217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054088387.1 → XP_053944362.1  alpha-sarcoglycan isoform X4

  2. XM_054088385.1 → XP_053944360.1  alpha-sarcoglycan isoform X2

  3. XM_054088384.1 → XP_053944359.1  alpha-sarcoglycan isoform X1

    Related
    ENSCCOP00010016617.1, ENSCCOT00010020367.1

  4. XM_054088386.1 → XP_053944361.1  alpha-sarcoglycan isoform X3

    Related
    ENSCCOP00010016632.1, ENSCCOT00010020382.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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