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P3H2 prolyl 3-hydroxylase 2 [ Cuculus canorus (common cuckoo) ]

Gene ID: 104063443, updated on 3-Aug-2024

Summary

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Gene symbol
P3H2
Gene description
prolyl 3-hydroxylase 2
Locus tag
N303_03011
See related
EnsemblRapid:ENSCCOG00010007854
Gene type
protein coding
RefSeq status
MODEL
Organism
Cuculus canorus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Cuculiformes; Cuculidae; Cuculus
Orthologs
human mouse all
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Genomic context

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See P3H2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_02 current bCucCan1.pri (GCF_017976375.1) 9 NC_071409.1 (13538503..13609846)
100 previous assembly ASM70932v1 (GCF_000709325.1) Unplaced Scaffold NW_009245942.1 (2150029..2165825)

Chromosome 9 - NC_071409.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128853033 Neighboring gene claudin 1 Neighboring gene uncharacterized LOC128853025 Neighboring gene tumor protein p63

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_017976375.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCucCan1.pri

Genomic

  1. NC_071409.1 Reference bCucCan1.pri

    Range
    13538503..13609846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054074456.1 → XP_053930431.1  prolyl 3-hydroxylase 2 isoform X3

  2. XM_054074454.1 → XP_053930429.1  prolyl 3-hydroxylase 2 isoform X1

    Related
    ENSCCOP00010011760.1, ENSCCOT00010013904.1

  3. XM_054074455.1 → XP_053930430.1  prolyl 3-hydroxylase 2 isoform X2

  4. XM_054074459.1 → XP_053930434.1  prolyl 3-hydroxylase 2 isoform X3

  5. XM_054074457.1 → XP_053930432.1  prolyl 3-hydroxylase 2 isoform X4

RNA

  1. XR_008451250.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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