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DEGS2 delta 4-desaturase, sphingolipid 2 [ Cuculus canorus (common cuckoo) ]

Gene ID: 104057744, updated on 3-Aug-2024

Summary

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Gene symbol
DEGS2
Gene description
delta 4-desaturase, sphingolipid 2
Locus tag
N303_15505
See related
EnsemblRapid:ENSCCOG00010016043
Gene type
protein coding
RefSeq status
MODEL
Organism
Cuculus canorus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Cuculiformes; Cuculidae; Cuculus
Orthologs
human mouse all
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Genomic context

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See DEGS2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current bCucCan1.pri (GCF_017976375.1) 5 NC_071405.1 (28440690..28479895, complement)
100 previous assembly ASM70932v1 (GCF_000709325.1) Unplaced Scaffold NW_009244715.1 (4077684..4095463)

Chromosome 5 - NC_071405.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128852400 Neighboring gene EMAP like 1 Neighboring gene Enah/Vasp-like Neighboring gene YY1 transcription factor Neighboring gene solute carrier family 25 member 29 Neighboring gene solute carrier family 25 member 47 Neighboring gene tryptophanyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingolipid delta-4 desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingosine hydroxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingolipid delta(4)-desaturase/C4-monooxygenase DES2
Names
Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_017976375.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCucCan1.pri

Genomic

  1. NC_071405.1 Reference bCucCan1.pri

    Range
    28440690..28479895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054068201.1 → XP_053924176.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X2

  2. XM_054068203.1 → XP_053924178.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X3

  3. XM_009559156.2 → XP_009557451.2  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X1

    Related
    ENSCCOP00010023369.1, ENSCCOT00010028389.1

  4. XM_054068202.1 → XP_053924177.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X3

RNA

  1. XR_008450064.1 RNA Sequence

  2. XR_008450066.1 RNA Sequence

  3. XR_008450065.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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