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SC5D sterol-C5-desaturase [ Cuculus canorus (common cuckoo) ]

Gene ID: 104056288, updated on 3-Aug-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
Locus tag
N303_14779
See related
EnsemblRapid:ENSCCOG00010004122
Gene type
protein coding
RefSeq status
MODEL
Organism
Cuculus canorus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Cuculiformes; Cuculidae; Cuculus
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current bCucCan1.pri (GCF_017976375.1) 23 NC_071423.1 (7546419..7550992)
100 previous assembly ASM70932v1 (GCF_000709325.1) Unplaced Scaffold NW_009244452.1 (35716..38083)

Chromosome 23 - NC_071423.1Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor E like Neighboring gene tectorin alpha Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC128854347

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase
Names
Lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_017976375.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCucCan1.pri

Genomic

  1. NC_071423.1 Reference bCucCan1.pri

    Range
    7546419..7550992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054087209.1 → XP_053943184.1  lathosterol oxidase

    Related
    ENSCCOP00010006168.1, ENSCCOT00010007241.1

  2. XM_054087210.1 → XP_053943185.1  lathosterol oxidase

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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