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SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Cuculus canorus (common cuckoo) ]

Gene ID: 104055382, updated on 3-Aug-2024

Summary

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Gene symbol
SPTLC3
Gene description
serine palmitoyltransferase long chain base subunit 3
Locus tag
N303_01221
See related
EnsemblRapid:ENSCCOG00010020380
Gene type
protein coding
RefSeq status
MODEL
Organism
Cuculus canorus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Cuculiformes; Cuculidae; Cuculus
Orthologs
human mouse all
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Genomic context

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See SPTLC3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current bCucCan1.pri (GCF_017976375.1) 3 NC_071403.1 (82803106..82879699)
100 previous assembly ASM70932v1 (GCF_000709325.1) Unplaced Scaffold NW_009244221.1 (5156643..5232587)

Chromosome 3 - NC_071403.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 3 Neighboring gene uncharacterized LOC128851870 Neighboring gene uncharacterized LOC128851826 Neighboring gene isthmin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 3
Names
Serine palmitoyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_017976375.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCucCan1.pri

Genomic

  1. NC_071403.1 Reference bCucCan1.pri

    Range
    82803106..82879699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054063597.1 → XP_053919572.1  serine palmitoyltransferase 3 isoform X2

  2. XM_054063596.1 → XP_053919571.1  serine palmitoyltransferase 3 isoform X1

    Related
    ENSCCOP00010028794.1, ENSCCOT00010035926.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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