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SGCG sarcoglycan gamma [ Phalacrocorax carbo (great cormorant) ]

Gene ID: 104046524, updated on 3-Aug-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
Locus tag
N336_11734
Gene type
protein coding
RefSeq status
MODEL
Organism
Phalacrocorax carbo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes; Phalacrocoracidae; Phalacrocorax
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_04 current bPhaCar2.1 (GCF_963921805.1) 1 NC_087513.1 (196965256..197109984, complement)
100 previous assembly ASM70892v1 (GCF_000708925.1) Unplaced Scaffold NW_009155376.1 (12518..67533)

Chromosome 1 - NC_087513.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135310455 Neighboring gene sacsin molecular chaperone Neighboring gene uncharacterized LOC135310467 Neighboring gene fibroblast growth factor 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan
Names
Gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963921805.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPhaCar2.1

Genomic

  1. NC_087513.1 Reference bPhaCar2.1

    Range
    196965256..197109984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064441152.1 → XP_064297222.1  gamma-sarcoglycan isoform X1

  2. XM_064441151.1 → XP_064297221.1  gamma-sarcoglycan isoform X1

  3. XM_064441150.1 → XP_064297220.1  gamma-sarcoglycan isoform X1

  4. XM_064441149.1 → XP_064297219.1  gamma-sarcoglycan isoform X1

  5. XM_064441154.1 → XP_064297224.1  gamma-sarcoglycan isoform X1

  6. XM_064441155.1 → XP_064297225.1  gamma-sarcoglycan isoform X1

  7. XM_064441153.1 → XP_064297223.1  gamma-sarcoglycan isoform X1

  8. XM_064441156.1 → XP_064297226.1  gamma-sarcoglycan isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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