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CBL Cbl proto-oncogene [ Phalacrocorax carbo (great cormorant) ]

Gene ID: 104043625, updated on 3-Aug-2024

Summary

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Gene symbol
CBL
Gene description
Cbl proto-oncogene
Locus tag
N336_10906
Gene type
protein coding
RefSeq status
MODEL
Organism
Phalacrocorax carbo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes; Phalacrocoracidae; Phalacrocorax
Orthologs
human mouse all
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Genomic context

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See CBL in Genome Data Viewer
Location:
chromosome: 21
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_04 current bPhaCar2.1 (GCF_963921805.1) 21 NC_087533.1 (5604568..6173719, complement)
100 previous assembly ASM70892v1 (GCF_000708925.1) Unplaced Scaffold NW_009144066.1 (20454..49594, complement)

Chromosome 21 - NC_087533.1Genomic Context describing neighboring genes Neighboring gene out at first homolog Neighboring gene tripartite motif containing 29 Neighboring gene nectin cell adhesion molecule 1 Neighboring gene uncharacterized LOC135316690 Neighboring gene uncharacterized LOC135316655 Neighboring gene Thy-1 cell surface antigen Neighboring gene C1q and TNF related 5 Neighboring gene ubiquitin specific peptidase 2 Neighboring gene membrane frizzled-related protein Neighboring gene ring finger protein 26 Neighboring gene melanoma cell adhesion molecule Neighboring gene NHERF family PDZ scaffold protein 4 Neighboring gene dynein regulatory complex subunit 12 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphotyrosine residue binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of epidermal growth factor-activated receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase CBL

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963921805.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPhaCar2.1

Genomic

  1. NC_087533.1 Reference bPhaCar2.1

    Range
    5604568..6173719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064471090.1 → XP_064327160.1  E3 ubiquitin-protein ligase CBL isoform X1

  2. XM_064471091.1 → XP_064327161.1  E3 ubiquitin-protein ligase CBL isoform X2

RNA

  1. XR_010375982.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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