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DYSF dysferlin [ Pelecanus crispus (Dalmatian pelican) ]

Gene ID: 104033261, updated on 3-Aug-2024

Summary

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Gene symbol
DYSF
Gene description
dysferlin
Locus tag
N334_01108
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelecanus crispus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Pelecanidae; Pelecanus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See DYSF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
37
Annotation release Status Assembly Chr Location
100 current ASM68737v1 (GCF_000687375.1) Unplaced Scaffold NW_009094603.1 (662..88478)

NW_009094603.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009094603.1 Unplaced Scaffold Reference ASM68737v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelecanus crispus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68737v1

Genomic

  1. NW_009094603.1 Reference ASM68737v1

    Range
    662..88478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009485854.1 → XP_009484129.1  dysferlin

    UniProtKB/TrEMBL
    A0A091TVN6
    Conserved Domains (7) summary
    cd04017
    Location:568 → 696
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04037
    Location:1014 → 1137
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08374
    Location:1248 → 1379
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:291 → 349
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:203 → 275
    FerB; FerB (NUC096) domain
    pfam08165
    Location:114 → 171
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1392 → 1486
    Ferlin_C; Ferlin C-terminus
Nucleotide Protein
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